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Skills Overview
Bioinformatics
HPC/cluster computing, QC/trimming (FastQC, Trimmomatic), read alignment (STAR), quantification (FeatureCounts), differential gene expression (DESeq2), cluster analysis (WGCNA), pathway analysis (Bioconductor, clusterProfiler), visualization (ggplot)
Lab
DNA and RNA extraction, museum preparation and processing of mammal specimens, clearing and staining, SEM, Micro-CT, Confocal Laser Scanning Microscopy, Histology (resin and paraffin wax), GC-MS, PCR
Data Analysis
Bioinformatics, quantitative microscopy, segmentation and modeling, statistical analyses and visualization
Programs
Linux/Unix command-line, bash/shell scripting, R, PAST, Python, Amira-Avizo, 3D Slicer, Blender, Cinema 4D, Adobe Creative Cloud, ImageJ/Fiji, MS Office
Field
Live mammal trapping and monitoring, fossil quarry maintenance, paleontological prospecting, field identification, plaster cast preparation, live marine specimen collection, quadrat sampling, wildlife photography
Communication
Scientific manuscript writing, SOP creation, scientific illustration, team management and coordination, data management, technical writing, video production
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